Current Research
I am currently working with my supervisor,
Leah Keshet, and
Alex Mogilner on the interactions of alpha-actinin
and actin filaments which are parts of a cell's cytoskeleton.
Alpha-actinin is an actin cross-linking molecule. It consists of two sites
which can bind to actin filaments. The following is an idealization of
this.
(a) shows a free alpha-actinin molecule, (b) shows an actin filament, (c) shows
a single bound alpha-actinin molecule and (d) shows a double bound
alpha-actinin molecule. Actin networks are formed when concentrations
of actin filaments are mixed with concentrations of alpha-actinin.
The types of networks
formed and their related properties depend on several variables
- the concentration of alpha-actinin,
- the length of actin filaments,
- the rates of association and dissociation of
alpha-actinin and actin filaments.
We will be studying the effects of these variables on various
mathematical models.
The two main physical problems which we are interested in are
- how the actin filaments cluster,
- how the clusters behave mechanically.
Our latest thought on the first point is to use integro-partial differential
equations to look at interactions between actin filaments
and alpha-actinin on the molecular scale. We believe that the
patterns which are formed govern the mechanical properties of these
structures.
The shape of the structures plays a key role in determining the properties
of the gel.
One structure is a lattice which behaves like a strong elastic solid
(part A). The alpha-actinin will not dissociate when linked
with an actin filament in this case. The second structure is also a
lattice (part B) which behaves like a solid, but deforms more easily than
the one in part A. This is due to the alpha-actinin dissociating
with the actin filaments. The third structure shows the actin filaments
aligning in bundles (part C). This structure behaves like a fluid with
the actin filaments sliding past one another as the bonds with the
alpha-actinin are continually broken and reformed. It has the
advantage of resisting fast deformations.
Please feel free to
contact me for more information.